[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: lu & df)

EMDB-35369:
Cryo-EM structure of RBD/E77-Fab complex
Method: single particle / : Lu DF, Zhang ZC

EMDB-27701:
Focused map (monomer A) for Arabidopsis SPY in complex with GDP-fucose
Method: single particle / : Kumar S, Zhou Y, Dillard L, Borgnia MJ, Bartesaghi A, Zhou P

EMDB-27702:
Focused map (monomer B) for Arabidopsis SPY in complex with GDP-fucose
Method: single particle / : Kumar S, Zhou Y, Lucas D, Borgnia MJ, Bartesaghi A, Zhou P

EMDB-35503:
Cryo-EM structure of Stimulator of interferon genes
Method: single particle / : Lu DF, Shang GJ

EMDB-35504:
Structure of Stimulator of interferon genes/ligand complex
Method: single particle / : Lu DF, Shang GJ

EMDB-28776:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28777:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28778:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28779:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-27177:
sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein
Method: single particle / : Abernathy ME, Barnes CO

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

EMDB-14121:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

EMDB-29002:
Nucleocapsid monomer structure from SARS-CoV-2
Method: single particle / : Casasanta M, Jonaid GM, Kaylor L, Luqiu W, DiCecco L, Solares M, Berry S, Kelly DF

EMDB-29072:
SARS-CoV-2 Nucleocapsid dimer structure determined from COVID-19 patients
Method: single particle / : Casasanta M, Jonaid GM, Kaylor L, Luqiu W, DiCecco L, Solares M, Berry S, Kelly DF

EMDB-28189:
SARS-CoV-2 Spike in complex with biparatopic nanobody BP10
Method: single particle / : Pymm PG, Glukhova A, Tham WH

EMDB-28190:
SARS-CoV-2 RBD in complex with biparatopic nanobody BP10 local refinement
Method: single particle / : Pymm PG, Glukhova A, Tham WH

EMDB-28816:
Wild type P53 dimer structure from human cancer cells
Method: single particle / : Solares M, Kelly DF

EMDB-28817:
P53 monomer structure
Method: single particle / : Solares M, Kelly DF

EMDB-27654:
A subtomogram average of H. neapolitanus Rubisco within alpha-carboxysomes
Method: subtomogram averaging / : Metskas LA, Blikstad C, Laughlin T, Savage DF, Jensen GJ

EMDB-31232:
Structural basis for the tethered peptide activation of adhesion GPCRs
Method: single particle / : Ping YQ, Xiao P, Yang F, Zhao RJ, Guo SC, Yan X, Wu X, Sun JP

EMDB-31254:
GPR114-Gs-scFv16 complex
Method: single particle / : Ping Y

EMDB-24002:
Cryo-EM map of the FLP cargo within the T. maritima encapsulin
Method: single particle / : LaFrance BJ, Savage DF, Nogales E

EMDB-24001:
Thermotoga maritima encapsulin shell
Method: single particle / : LaFrance BJ, Nogales E, Savage DF

EMDB-22518:
SpCas9 delta4CE Ternary Complex
Method: single particle / : Sham A, Laughlin TG, Savage DF

EMDB-24147:
Nucleocapsid protein from the SARS-CoV-2 Coronavirus
Method: single particle / : Casasanta MA, Kelly DF

EMDB-23566:
The SARS-CoV-2 spike protein receptor binding domain bound to neutralizing nanobodies WNb 2 and WNb 10
Method: single particle / : Pymm P, Glukhova A, Tham WH

EMDB-23567:
Cryo-EM map of SARS-CoV-2 Spike protein bound to neutralising nanobodies WNb2 and WNb10 (C3 symmetry)
Method: single particle / : Pymm P, Tham WH, Glukhova A

EMDB-23568:
Cryo-EM map of SARS-CoV-2 Spike protein in complex with neutralising nanobodies WNb2 and WNb10 (C1 symmetry)
Method: single particle / : Pymm P, Tham WH, Glukhova A

PDB-7lx5:
The SARS-CoV-2 spike protein receptor binding domain bound to neutralizing nanobodies WNb 2 and WNb 10
Method: single particle / : Pymm P, Glukhova A, Tham WH

EMDB-22982:
Nucleocapsid protein from the SARS-CoV-2 coronavirus
Method: single particle / : Casasanta MA, Kelly DF

EMDB-22827:
P53 tetramer from Glioblastoma
Method: single particle / : Solares MJ, Kelly DF

EMDB-22124:
SARS-CoV-2 S 2P negative-stain EM
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22125:
SARS-CoV-2 S 2P trimer complexed with COV57 polyclonal Fabs
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22126:
SARS-CoV-2 S 2P trimer complexed with polyclonal Fabs from recovered COVID-19 individual COV21
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22127:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 1)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22128:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 2)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22094:
CryoEM structure of the holo-SrpI encapsulin complex from Synechococcus elongatus PCC 7942
Method: single particle / : LaFrance BJ, Nichols RJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Savage DF, Nogales E

EMDB-22095:
CryoEM structure of the apo-SrpI encapasulin complex from Synechococcus elongatus PCC 7942
Method: single particle / : LaFrance BJ, Nichols RJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Savage DF, Nogales E

PDB-6x8m:
CryoEM structure of the holo-SrpI encapsulin complex from Synechococcus elongatus PCC 7942
Method: single particle / : LaFrance BJ, Nichols RJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Savage DF, Nogales E

PDB-6x8t:
CryoEM structure of the apo-SrpI encapasulin complex from Synechococcus elongatus PCC 7942
Method: single particle / : LaFrance BJ, Nichols RJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Savage DF, Nogales E

EMDB-0378:
p53 dimer assembly
Method: single particle / : Kelly DF, Dearnaley WJ, Varano AC

EMDB-1807:
Saccharomyces cerevisiae ribonucleotide reductase hole complex at the presence of dATP
Method: single particle / : Fairman JW, Wijerathna SR, Ahmad MF, Xu H, Nakano R, Jha S, Prendergast J, Welin RM, Flodin S, Roos A, Nordlund P, Li Z, Walz T, Dealwis CG

EMDB-1877:
CryoEM structure of the chromatin remodelling factor ISW1a bound to a mononucleosome (45N29)
Method: single particle / : Frouws TD, Richmond TJ

EMDB-1878:
CryoEM structure of the remodelling factor ISW1a bound to a mononucleosome (45N0)
Method: single particle / : Frouws TD, Richmond TJ

EMDB-1409:
The EM structure of human DNA polymerase gamma reveals a localized contact between the catalytic and accessory subunits.
Method: single particle / : Yakubovskaya E, Lukin M, Chen Z, Berriman J, Wall JS, Kobayashi R, Kisker C, Bogenhagen DF

EMDB-1410:
The EM structure of human DNA polymerase gamma reveals a localized contact between the catalytic and accessory subunits.
Method: single particle / : Yakubovskaya E, Lukin M, Chen Z, Berriman J, Wall JS, Kobayashi R, Kisker C, Bogenhagen DF

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more